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| The seeding was determined in part by user nominations. The seeds are listed here in order by division. Background color indicates the round in which they were eliminated. |
| North Division | ||
| 1 | Link | |
| 2 | Samus Aran | |
| 3 | Luigi | |
| 4 | Sam Fisher | |
| 5 | Tidus | |
| 6 | Squall Leonhart | |
| 7 | KOS-MOS | |
| 8 | Pikachu | |
| 9 | Fox McCloud | |
| 10 | Crash Bandicoot | |
| 11 | Jill Valentine | |
| 12 | Ganondorf | |
| 13 | Magus | |
| 14 | Ratchet | |
| 15 | Isaac | |
| 16 | AiAi | |
| East Division | ||
| 1 | Cloud Strife | |
| 2 | Sonic the Hedgehog | |
| 3 | Master Chief | |
| 4 | Yoshi | |
| 5 | Bowser | |
| 6 | Sora | |
| 7 | Zero | |
| 8 | Auron | |
| 9 | Miles "Tails" Prower | |
| 10 | Scorpion | |
| 11 | Aeris Gainsborough | |
| 12 | Ness | |
| 13 | Conker | |
| 14 | Felix | |
| 15 | Ken | |
| 16 | CATS | |
| South Division | ||
| 1 | Mario | |
| 2 | Sephiroth | |
| 3 | Kirby | |
| 4 | Crono | |
| 5 | Pac-Man | |
| 6 | Alucard | |
| 7 | Gordon Freeman | |
| 8 | Wario | |
| 9 | Shadow the Hedgehog | |
| 10 | Max Payne | |
| 11 | Bomberman | |
| 12 | Kefka | |
| 13 | Tom Nook | |
| 14 | Ramza Beoulve | |
| 15 | Raziel | |
| 16 | Captain Olimar | |
| West Division | ||
| 1 | Solid Snake | |
| 2 | Mega Man | |
| 3 | Tommy Vercetti | |
| 4 | Dante | |
| 5 | Ryu | |
| 6 | Donkey Kong | |
| 7 | Lara Croft | |
| 8 | Knuckles the Echidna | |
| 9 | Yuna | |
| 10 | Zelda | |
| 11 | Vyse | |
| 12 | Duke Nukem | |
| 13 | Ryo Hazuki | |
| 14 | Kite | |
| 15 | Mr. Resetti | |
| 16 | Raiden | |